PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G082500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ARF
Protein Properties Length: 739aa    MW: 83013.2 Da    PI: 6.2664
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G082500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.91.9e-2344145199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F 
  Manes.02G082500.1.p  44 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI 131
                          99*****************************8544444..48************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            ++++ +l+++++r+
  Manes.02G082500.1.p 132 --WNEKNQLLLGIRRA 145
                          ..8899999****997 PP

2Auxin_resp120.11.7e-39170253183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          aahaa+t+s F+v+YnPras+seFv++++k++ka+  ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  Manes.02G082500.1.p 170 AAHAAATNSCFTVFYNPRASPSEFVIPLSKYVKAVFhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 253
                          79********************************87599******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.83E-4928173IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.0E-4237159IPR015300DNA-binding pseudobarrel domain
CDDcd100171.98E-2143144No hitNo description
SMARTSM010191.1E-2344146IPR003340B3 DNA binding domain
PROSITE profilePS5086312.33744146IPR003340B3 DNA binding domain
PfamPF023621.1E-2144145IPR003340B3 DNA binding domain
PfamPF065071.5E-34170253IPR010525Auxin response factor
SuperFamilySSF542772.21E-7627707No hitNo description
PfamPF023091.3E-7630717IPR033389AUX/IAA domain
PROSITE profilePS5174524.455633717IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    Send to blast
MHADVETDEV YAQMTLQPLT PQEQKDTFLP MELGMPSKQP TNYFCKTLTA SDTSTHGGFS  60
VPRRAAEKVF PPLDFSQQPP AQELIARDLH DVEWKFRHIF RGQPKRHLLT TGWSVFVSAK  120
RLVAGDSVLF IWNEKNQLLL GIRRATRPQT VMPSSVLSSD SMHIGLLAAA AHAAATNSCF  180
TVFYNPRASP SEFVIPLSKY VKAVFHTRVS VGMRFRMLFE TEESSVRRYM GTITGISDLD  240
PVRWPNSHWR SVKVGWDEST AGERQPRVSL WEIEPLTTFP MYPSLFPLRL RRPWHPGPSS  300
LLDNRDEAGN GLMWLRGGTG EQGLHSLNFQ AVNMFPWTQQ RLDPALLGND QNQWYQAMLA  360
SGLGDPLRQQ FMQFQQPFQY LQQSSNHYPL LQLQQQQQAI QQSTSHNILQ AQNQISTESL  420
PRHLLQQQLN NQPDDQAQQQ QHNYHDALQI QGEQLKRQQS NLPSPSFSKT DFMDSSTKFS  480
ASTTPMQNML GSLCAEGSGN LLDFTRTGQS PLTTLTEQLP QQSWVPKYAH SQVNAFTNAV  540
SLPRPYPEKD HAVEPENCSL DAQNATNFGV NIDSSGLLLP TTLPRYATST VDSDVSSMPL  600
GDPGFQSSMY GGVQDSSELL PSAGQVDPPT PSRTFVKVYK SGSVGRSLDI SRFSSYHELR  660
EELAQMFGIE GKLENPHRSG WQLVFVDREN DVLLLGDDPW EAFVNNVWYI KILSPGDVQK  720
MGEQGLESFS PNVGQRIE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1241274115388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012074114.10.0PREDICTED: auxin response factor 8 isoform X1
SwissprotQ9FGV10.0ARFH_ARATH; Auxin response factor 8
TrEMBLA0A067KWZ20.0A0A067KWZ2_JATCU; Auxin response factor
STRINGPOPTR_0017s01870.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49582850
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0auxin response factor 8